Alan,
I can see from debug that freeradius is proxying only acct-requests to fortigate as it should:

Sending Accounting-Request of id 237 to 192.x port 1813
        Acct-Session-Id = "5419E16643C100"
        User-Name = "calena"
        Acct-Status-Type = Stop
        Service-Type = Framed-User
        Framed-Protocol = PPP
        Acct-Authentic = RADIUS
        Acct-Session-Time = 19018
        Acct-Output-Octets = 1259331153
        Acct-Input-Octets = 37100064
        Acct-Output-Packets = 970288
        Acct-Input-Packets = 366792
        Calling-Station-Id = "9C:D6:43:D5:37:75"
        NAS-Port-Type = Async
        Acct-Terminate-Cause = User-Request
        Framed-IP-Address = x.x.x.x
        NAS-IP-Address = y.y.y.y
        NAS-Port = 481
        Acct-Delay-Time = 0
        Proxy-State = 0x323436
Proxying request 125 to home server 192.x port 1813
Sending Accounting-Request of id 237 to 192.x port 1813

Is there a way to proxy those packets *only* if contains the Class attribute or Acct-Status-Type = Stop?

How can I "filter" that?